PUBLICATIONS

Automatically generated from my Google Scholar profile, which may contain a more up-to-date list.


  1. Lessons Learned from a Ligand-Unbinding Stress Test for Weighted Ensemble Simulations
    Anthony T. Bogetti, Darian T. Yang, Hannah E. Piston, David N. LeBard, and Lillian T. Chong. ACS Omega (2025).
  2. Illuminating an invisible state of the HIV-1 capsid protein CTD dimer using 19F NMR and weighted ensemble simulations
    Darian T Yang, Lillian T Chong, and Angela M Gronenborn. Proceedings of the National Academy of Sciences (2025).
  3. Cumulative asparagine to aspartate deamidation fails to perturb γD‐crystallin structure and stability
    Alex J Guseman, Jeremy J González, Darian Yang, and Angela M Gronenborn. Protein Science (2024).
  4. WEDAP: A Python package for streamlined plotting of molecular simulation data
    Darian T Yang, and Lillian T Chong. Journal of chemical information and modeling (2024).
  5. Rare-event sampling using a reinforcement learning-based weighted ensemble method
    Darian T Yang, Alex M Goldberg, and Lillian T Chong. bioRxiv (2024).
  6. Invisible Protein States and How to View Them: Integrating 19F NMR and Weighted Ensemble Simulations
    Darian T Yang. (2024).
  7. Ligand-capped cobalt (II) multiplies the value of the double-histidine motif for PCS NMR studies
    Wenkai Zhu, Darian T Yang, and Angela M Gronenborn. Journal of the American Chemical Society (2023).
  8. Targeting spike glycans to inhibit SARS-CoV2 viral entry
    Alex J Guseman, Linda J Rennick, Sham Nambulli, Chandra N Roy, David R Martinez, Darian T Yang, Fatema Bhinderwala, Sandra Vergara, Alexandra Schaefer, Ralph S Baric, Zandrea Ambrose, W Paul Duprex, and Angela M Gronenborn. Proceedings of the National Academy of Sciences (2023).
  9. Alternate conformational states of the HIV-1 capsid protein: Atomistic structures and dynamics of interconversion
    Darian T Yang, Angela M Gronenborn, and Lillian T Chong. Biophysical Journal (2023).
  10. Development and validation of fluorinated, aromatic amino acid parameters for use with the AMBER ff15ipq protein force field
    Darian T Yang, Angela M Gronenborn, and Lillian T Chong. The Journal of Physical Chemistry A (2022).
  11. A twist in the road less traveled: The AMBER ff15ipq-m force field for protein mimetics
    Anthony T Bogetti, Hannah E Piston, Jeremy MG Leung, Chino C Cabalteja, Darian T Yang, Alex J DeGrave, Karl T Debiec, David S Cerutti, David A Case, W Seth Horne, and Lillian T Chong. The Journal of chemical physics (2020).